PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g06690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 505aa    MW: 56090.3 Da    PI: 9.3452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g06690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126282323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C+ C+k F r  nL+ H r H
  CA05g06690 62 CEVCNKGFQREQNLQLHRRGH 82
                *******************88 PP

2zf-C2H213.40.00023137159123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  CA05g06690 137 FKCEKCSKKYAVQSDWKAHSKTC 159
                 89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.08E-75982No hitNo description
Gene3DG3DSA:3.30.160.609.5E-65982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976082IPR007087Zinc finger, C2H2
SMARTSM003550.0256082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355180102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-5125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-7132157No hitNo description
SMARTSM0035593137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MRQEEELIQN HQEMLHQSHA HEAPTKKRRN QPGTPSKYLS SPDAEVIALS PKTLMATNRF  60
LCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNTKEVAKRK VYLCPEPTCI HHEPSRALGD  120
LTGIKKHYFR KHGEKKFKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT  180
HRAFCDALVQ ETTKTFIPPT TTFNTLGMNN NQFLYGSSSN INLGNFSQLS NNNITKTTTS  240
TTTSAHRFGH HDNNLIGSSS NTNSFFHDQD YANNIKPMVH GLMQLPNLDQ NNDHTTNMFN  300
LNFFQNNSTN NLSTSGLLGD HHHNNNISCS IPSLYGTQIF ESSGAISSSG PTMSATALLQ  360
KAAQMGSSTT SNISTTASLL KAFGSTSGGS SSSGTKSDHQ ALNFGNEITV DGVINAYGAG  420
GSHEGYNNTT TKLNFEQQHQ GPLQKKQLTR DFLGVGEMVR SMSGRFGTQR EQQQQNDGLN  480
MMSSLLDSER NQIQQSFGSG PNFQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-179HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572476.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-124IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM1CVT20.0M1CVT2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000758370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-100indeterminate(ID)-domain 4